IL_4V6Q_061

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

CAUGG*CUGGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6Q_061 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3806

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

4V6Q|1|AA|C|1412
4V6Q|1|AA|A|1413
4V6Q|1|AA|U|1414
4V6Q|1|AA|G|1415
4V6Q|1|AA|G|1416
*
4V6Q|1|AA|C|1484
4V6Q|1|AA|U|1485
4V6Q|1|AA|G|1486
4V6Q|1|AA|G|1487
4V6Q|1|AA|G|1488

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AO

30S ribosomal protein S12

Chain BB

Large subunit ribosomal RNA; LSU rRNA