IL_4V6Q_106

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

4V6Q|1|BB|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6Q_106 not in the Motif Atlas

Homologous match to IL_4WF9_041

Geometric discrepancy: 0.3224

The information below is about IL_4WF9_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

4V6Q|1|BB|G|1031
4V6Q|1|BB|A|1032
4V6Q|1|BB|U|1033
4V6Q|1|BB|G|1034
*
4V6Q|1|BB|C|1121
4V6Q|1|BB|G|1122
4V6Q|1|BB|C|1123

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L36

Chain BH

50S ribosomal protein L6

Chain BO

50S ribosomal protein L16