IL_4V6Q_113

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4V6Q|1|BB|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6Q_113 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.219

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4V6Q|1|BB|C|1208
4V6Q|1|BB|U|1209
4V6Q|1|BB|G|1210
4V6Q|1|BB|C|1211
4V6Q|1|BB|G|1212
4V6Q|1|BB|A|1213
4V6Q|1|BB|A|1214
4V6Q|1|BB|G|1215
*
4V6Q|1|BB|U|1234
4V6Q|1|BB|G|1235
4V6Q|1|BB|G|1236
4V6Q|1|BB|A|1237
4V6Q|1|BB|G|1238

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BS

50S ribosomal protein L20