IL_4V6Q_141
3D structure
- PDB id
- 4V6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 11.5 Å
Loop
- Sequence
- UUAAUUGAUG*UUGAUCGAAG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6Q_141 not in the Motif Atlas
- Homologous match to IL_5J7L_387
- Geometric discrepancy: 0.4774
- The information below is about IL_5J7L_387
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61249.1
- Basepair signature
- cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V6Q|1|BB|U|1851
4V6Q|1|BB|U|1852
4V6Q|1|BB|A|1853
4V6Q|1|BB|A|1854
4V6Q|1|BB|U|1855
4V6Q|1|BB|U|1856
4V6Q|1|BB|G|1857
4V6Q|1|BB|A|1858
4V6Q|1|BB|U|1859
4V6Q|1|BB|G|1860
*
4V6Q|1|BB|U|1882
4V6Q|1|BB|U|1883
4V6Q|1|BB|G|1884
4V6Q|1|BB|A|1885
4V6Q|1|BB|U|1886
4V6Q|1|BB|C|1887
4V6Q|1|BB|G|1888
4V6Q|1|BB|A|1889
4V6Q|1|BB|A|1890
4V6Q|1|BB|G|1891
Current chains
- Chain BB
- 23S ribomosomal RNA
Nearby chains
- Chain AD
- Transfer RNA; tRNA
- Chain BC
- 50S ribosomal protein L1
Coloring options: