IL_4V6Q_167

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6Q_167 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.5092

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V6Q|1|BB|C|2652
4V6Q|1|BB|U|2653
4V6Q|1|BB|A|2654
4V6Q|1|BB|G|2655
4V6Q|1|BB|U|2656
4V6Q|1|BB|A|2657
4V6Q|1|BB|C|2658
*
4V6Q|1|BB|G|2663
4V6Q|1|BB|G|2664
4V6Q|1|BB|A|2665
4V6Q|1|BB|C|2666
4V6Q|1|BB|C|2667
4V6Q|1|BB|G|2668

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BH

50S ribosomal protein L6