IL_4V6Q_178

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

4V6Q|1|AA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6Q_178 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.2113

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

4V6Q|1|AA|G|147
4V6Q|1|AA|G|148
4V6Q|1|AA|A|149
4V6Q|1|AA|U|150
4V6Q|1|AA|A|151
4V6Q|1|AA|A|152
4V6Q|1|AA|C|153
*
4V6Q|1|AA|G|168
4V6Q|1|AA|C|169
4V6Q|1|AA|U|170
4V6Q|1|AA|A|171
4V6Q|1|AA|A|172
4V6Q|1|AA|U|173
4V6Q|1|AA|A|174
4V6Q|1|AA|C|175

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AW

30S ribosomal protein S20