IL_4V6R_042

3D structure

PDB id

4V6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

4V6R|1|AA|C|934

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6R_042 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.2192

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4V6R|1|AA|G|933
4V6R|1|AA|C|934
4V6R|1|AA|A|935
*
4V6R|1|AA|U|1380
4V6R|1|AA|U|1381
4V6R|1|AA|C|1382
4V6R|1|AA|C|1383
4V6R|1|AA|C|1384

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

Transfer RNA; tRNA

Chain AJ

30S ribosomal protein S7

Chain AL

30S ribosomal protein S9