IL_4V6R_085

3D structure

PDB id

4V6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V6R|1|BB|G|801

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6R_085 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.1692

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V6R|1|BB|G|674
4V6R|1|BB|A|675
4V6R|1|BB|A|676
4V6R|1|BB|A|677
4V6R|1|BB|C|678
*
4V6R|1|BB|G|799
4V6R|1|BB|A|800
4V6R|1|BB|G|801
4V6R|1|BB|A|802
4V6R|1|BB|U|803
4V6R|1|BB|A|804
4V6R|1|BB|G|805
4V6R|1|BB|C|806

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BN

50S ribosomal protein L15