IL_4V6R_103

3D structure

PDB id

4V6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6R_103 not in the Motif Atlas

Homologous match to IL_7A0S_036

Geometric discrepancy: 0.3433

The information below is about IL_7A0S_036

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

4V6R|1|BB|U|1018
4V6R|1|BB|U|1019
4V6R|1|BB|A|1020
4V6R|1|BB|A|1021
4V6R|1|BB|G|1022
4V6R|1|BB|U|1023
4V6R|1|BB|G|1024
*
4V6R|1|BB|C|1140
4V6R|1|BB|U|1141
4V6R|1|BB|A|1142
4V6R|1|BB|A|1143
4V6R|1|BB|A|1144

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L36

Chain BH

50S ribosomal protein L6

Chain BL

50S ribosomal protein L13