IL_4V6R_174

3D structure

PDB id

4V6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

UCGAA*UGG

Length

8 nucleotides

Bulged bases

4V6R|1|AA|G|64, 4V6R|1|AA|A|65

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6R_174 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.2948

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

4V6R|1|AA|U|62
4V6R|1|AA|C|63
4V6R|1|AA|G|64
4V6R|1|AA|A|65
4V6R|1|AA|A|66
*
4V6R|1|AA|U|103
4V6R|1|AA|G|104
4V6R|1|AA|G|105

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AW

30S ribosomal protein S20