IL_4V6R_190

3D structure

PDB id

4V6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6R_190 not in the Motif Atlas

Homologous match to IL_9DFE_015

Geometric discrepancy: 0.1635

The information below is about IL_9DFE_015

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

4V6R|1|BB|C|672
4V6R|1|BB|C|673
4V6R|1|BB|G|674
*
4V6R|1|BB|C|806
4V6R|1|BB|U|807
4V6R|1|BB|G|808

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BN

50S ribosomal protein L15