3D structure

PDB id
4V6R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
11.5 Å

Loop

Sequence
GG*CA(OMC)
Length
5 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6R_206 not in the Motif Atlas
Homologous match to IL_9DFE_092
Geometric discrepancy: 0.2084
The information below is about IL_9DFE_092
Detailed Annotation
Major groove platform
Broad Annotation
No text annotation
Motif group
IL_48076.7
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
40

Unit IDs

4V6R|1|BB|G|2454
4V6R|1|BB|G|2455
*
4V6R|1|BB|C|2496
4V6R|1|BB|A|2497
4V6R|1|BB|OMC|2498

Current chains

Chain BB
23S ribomosomal RNA

Nearby chains

Chain BE
50S ribosomal protein L3
Chain BO
50S ribosomal protein L16
Chain BY
50S ribosomal protein L27

Coloring options:


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