IL_4V6S_003

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

CC*GAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6S_003 not in the Motif Atlas

Geometric match to IL_3MXH_005

Geometric discrepancy: 0.3737

The information below is about IL_3MXH_005

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_87975.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

10

Unit IDs

4V6S|1|AA|C|30
4V6S|1|AA|C|31
*
4V6S|1|AA|G|51
4V6S|1|AA|A|52
4V6S|1|AA|A|53
4V6S|1|AA|G|54

Current chains

Chain AA

5S ribomosomal RNA

Nearby chains

Chain AG

50S ribosomal protein L5

Chain AQ

50S ribosomal protein L18