IL_4V6S_016

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

4V6S|1|AB|A|504, 4V6S|1|AB|A|508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6S_016 not in the Motif Atlas

Homologous match to IL_7RQB_014

Geometric discrepancy: 0.1736

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

4V6S|1|AB|G|481
4V6S|1|AB|A|482
4V6S|1|AB|A|483
4V6S|1|AB|C|484
*
4V6S|1|AB|G|496
4V6S|1|AB|A|497
4V6S|1|AB|G|498
4V6S|1|AB|U|499
4V6S|1|AB|G|500
4V6S|1|AB|A|501
4V6S|1|AB|A|502
4V6S|1|AB|A|503
4V6S|1|AB|A|504
4V6S|1|AB|A|505
4V6S|1|AB|G|506
4V6S|1|AB|A|507
4V6S|1|AB|A|508
4V6S|1|AB|C|509

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains

Chain AU

50S ribosomal protein L22

Chain AW

50S ribosomal protein L24