IL_4V6S_020

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V6S|1|AB|G|801, 4V6S|1|AB|G|805

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6S_020 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.3032

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V6S|1|AB|G|674
4V6S|1|AB|A|675
4V6S|1|AB|A|676
4V6S|1|AB|A|677
4V6S|1|AB|C|678
*
4V6S|1|AB|G|799
4V6S|1|AB|A|800
4V6S|1|AB|G|801
4V6S|1|AB|A|802
4V6S|1|AB|U|803
4V6S|1|AB|A|804
4V6S|1|AB|G|805
4V6S|1|AB|C|806

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AN

50S ribosomal protein L15