IL_4V6S_022

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

UUGAAG*UGGAGGA

Length

13 nucleotides

Bulged bases

4V6S|1|AB|G|729

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6S_022 not in the Motif Atlas

Geometric match to IL_4V88_421

Geometric discrepancy: 0.3469

The information below is about IL_4V88_421

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared related

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V6S|1|AB|U|702
4V6S|1|AB|U|703
4V6S|1|AB|G|704
4V6S|1|AB|A|705
4V6S|1|AB|A|706
4V6S|1|AB|G|707
*
4V6S|1|AB|U|724
4V6S|1|AB|G|725
4V6S|1|AB|G|726
4V6S|1|AB|A|727
4V6S|1|AB|G|728
4V6S|1|AB|G|729
4V6S|1|AB|A|730

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L2