IL_4V6S_027

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

AUC*GAAU

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6S_027 not in the Motif Atlas

Geometric match to IL_4P3T_002

Geometric discrepancy: 0.3437

The information below is about IL_4P3T_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01472.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

4V6S|1|AB|A|849
4V6S|1|AB|U|850
4V6S|1|AB|C|851
*
4V6S|1|AB|G|926
4V6S|1|AB|A|927
4V6S|1|AB|A|928
4V6S|1|AB|U|929

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains

Chain A1

50S ribosomal protein L30