IL_4V6S_028
3D structure
- PDB id
- 4V6S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.1 Å
Loop
- Sequence
- GGGGUAG*CGAAUAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6S_028 not in the Motif Atlas
- Homologous match to IL_5J7L_270
- Geometric discrepancy: 0.198
- The information below is about IL_5J7L_270
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_29198.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V6S|1|AB|G|856
4V6S|1|AB|G|857
4V6S|1|AB|G|858
4V6S|1|AB|G|859
4V6S|1|AB|U|860
4V6S|1|AB|A|861
4V6S|1|AB|G|862
*
4V6S|1|AB|C|915
4V6S|1|AB|G|916
4V6S|1|AB|A|917
4V6S|1|AB|A|918
4V6S|1|AB|U|919
4V6S|1|AB|A|920
4V6S|1|AB|C|921
Current chains
- Chain AB
- 23S ribomosomal RNA
Nearby chains
- Chain A1
- 50S ribosomal protein L30
- Chain AA
- 5S ribosomal RNA; 5S rRNA
- Chain AO
- 50S ribosomal protein L16
- Chain AY
- 50S ribosomal protein L27
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