IL_4V6S_029

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

GA*UGC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6S_029 not in the Motif Atlas

Geometric match to IL_4V9F_034

Geometric discrepancy: 0.1603

The information below is about IL_4V9F_034

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

62

Unit IDs

4V6S|1|AB|G|862
4V6S|1|AB|A|863
*
4V6S|1|AB|U|913
4V6S|1|AB|G|914
4V6S|1|AB|C|915

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains

Chain AA

5S ribosomal RNA; 5S rRNA

Chain AO

50S ribosomal protein L16

Chain AY

50S ribosomal protein L27