IL_4V6S_035
3D structure
- PDB id
- 4V6S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.1 Å
Loop
- Sequence
- CGCCA*UGCG
- Length
- 9 nucleotides
- Bulged bases
- 4V6S|1|AB|C|995
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6S_035 not in the Motif Atlas
- Geometric match to IL_1D4R_001
- Geometric discrepancy: 0.3229
- The information below is about IL_1D4R_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
4V6S|1|AB|C|992
4V6S|1|AB|G|993
4V6S|1|AB|C|994
4V6S|1|AB|C|995
4V6S|1|AB|A|996
*
4V6S|1|AB|U|1159
4V6S|1|AB|G|1160
4V6S|1|AB|C|1161
4V6S|1|AB|G|1162
Current chains
- Chain AB
- 23S ribomosomal RNA
Nearby chains
- Chain A1
- 50S ribosomal protein L30
- Chain AL
- 50S ribosomal protein L13
- Chain AS
- 50S ribosomal protein L20
- Chain AT
- 50S ribosomal protein L21
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