IL_4V6S_046

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

CGUU*AAGUG

Length

9 nucleotides

Bulged bases

4V6S|1|AB|G|1248

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6S_046 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.3931

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4V6S|1|AB|C|1196
4V6S|1|AB|G|1197
4V6S|1|AB|U|1198
4V6S|1|AB|U|1199
*
4V6S|1|AB|A|1246
4V6S|1|AB|A|1247
4V6S|1|AB|G|1248
4V6S|1|AB|U|1249
4V6S|1|AB|G|1250

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AN

50S ribosomal protein L15

Chain AS

50S ribosomal protein L20