IL_4V6S_056

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

4V6S|1|AB|U|1554

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6S_056 not in the Motif Atlas

Homologous match to IL_7A0S_053

Geometric discrepancy: 0.484

The information below is about IL_7A0S_053

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4V6S|1|AB|C|1437
4V6S|1|AB|U|1438
4V6S|1|AB|A|1439
4V6S|1|AB|U|1440
*
4V6S|1|AB|A|1551
4V6S|1|AB|A|1552
4V6S|1|AB|A|1553
4V6S|1|AB|U|1554
4V6S|1|AB|G|1555

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains