IL_4V6S_108

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

AUUGAA*UUAAU

Length

11 nucleotides

Bulged bases

4V6S|1|BA|G|31

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6S_108 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3958

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

4V6S|1|BA|A|28
4V6S|1|BA|U|29
4V6S|1|BA|U|30
4V6S|1|BA|G|31
4V6S|1|BA|A|32
4V6S|1|BA|A|33
*
4V6S|1|BA|U|551
4V6S|1|BA|U|552
4V6S|1|BA|A|553
4V6S|1|BA|A|554
4V6S|1|BA|U|555

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BF

30S ribosomal protein S4

Chain BN

30S ribosomal protein S12