IL_4V6S_109

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

CAG*CAUG

Length

7 nucleotides

Bulged bases

4V6S|1|BA|A|397

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6S_109 not in the Motif Atlas

Geometric match to IL_4KYY_002

Geometric discrepancy: 0.2506

The information below is about IL_4KYY_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

4V6S|1|BA|C|43
4V6S|1|BA|A|44
4V6S|1|BA|G|45
*
4V6S|1|BA|C|396
4V6S|1|BA|A|397
4V6S|1|BA|U|398
4V6S|1|BA|G|399

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BF

30S ribosomal protein S4

Chain BR

30S ribosomal protein S16