IL_4V6S_129

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6S_129 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.2504

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4V6S|1|BA|G|450
4V6S|1|BA|A|451
4V6S|1|BA|A|452
4V6S|1|BA|G|453
4V6S|1|BA|G|454
4V6S|1|BA|G|455
*
4V6S|1|BA|C|477
4V6S|1|BA|A|478
4V6S|1|BA|U|479
4V6S|1|BA|U|480
4V6S|1|BA|G|481
4V6S|1|BA|A|482
4V6S|1|BA|C|483

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BR

30S ribosomal protein S16