IL_4V6S_132

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6S_132 not in the Motif Atlas

Homologous match to IL_4LFB_020

Geometric discrepancy: 0.3229

The information below is about IL_4LFB_020

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

4V6S|1|BA|C|504
4V6S|1|BA|G|505
4V6S|1|BA|G|506
4V6S|1|BA|C|507
4V6S|1|BA|U|508
4V6S|1|BA|A|509
4V6S|1|BA|A|510
4V6S|1|BA|C|511
*
4V6S|1|BA|G|540
4V6S|1|BA|G|541

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BB

mRNA

Chain BF

30S ribosomal protein S4

Chain BG

30S ribosomal protein S5

Chain BN

30S ribosomal protein S12