IL_4V6S_139

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6S_139 not in the Motif Atlas

Geometric match to IL_7RQB_066

Geometric discrepancy: 0.2058

The information below is about IL_7RQB_066

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

4V6S|1|BA|G|654
4V6S|1|BA|A|655
*
4V6S|1|BA|U|751
4V6S|1|BA|G|752
4V6S|1|BA|A|753
4V6S|1|BA|C|754

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BJ

30S ribosomal protein S8

Chain BQ

30S ribosomal protein S15