IL_4V6S_151

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

GGU*ACAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6S_151 not in the Motif Atlas

Geometric match to IL_7A0S_092

Geometric discrepancy: 0.2884

The information below is about IL_7A0S_092

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

4V6S|1|BA|G|953
4V6S|1|BA|G|954
4V6S|1|BA|U|955
*
4V6S|1|BA|A|1225
4V6S|1|BA|C|1226
4V6S|1|BA|A|1227
4V6S|1|BA|C|1228

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BC

Transfer RNA; tRNA

Chain BO

30S ribosomal protein S13

Chain BU

30S ribosomal protein S19