IL_4V6S_167

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

GU(5MC)AC*GAAGUC

Length

11 nucleotides

Bulged bases

4V6S|1|BA|A|1492, 4V6S|1|BA|A|1493

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6S_167 not in the Motif Atlas

Homologous match to IL_5J7L_060

Geometric discrepancy: 0.5224

The information below is about IL_5J7L_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6S|1|BA|G|1405
4V6S|1|BA|U|1406
4V6S|1|BA|5MC|1407
4V6S|1|BA|A|1408
4V6S|1|BA|C|1409
*
4V6S|1|BA|G|1491
4V6S|1|BA|A|1492
4V6S|1|BA|A|1493
4V6S|1|BA|G|1494
4V6S|1|BA|U|1495
4V6S|1|BA|C|1496

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain AB

Large subunit ribosomal RNA; LSU rRNA

Chain BB

mRNA

Chain BN

30S ribosomal protein S12