IL_4V6S_195

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

CGCA*UGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6S_195 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2579

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4V6S|1|AB|C|2676
4V6S|1|AB|G|2677
4V6S|1|AB|C|2678
4V6S|1|AB|A|2679
*
4V6S|1|AB|U|2728
4V6S|1|AB|G|2729
4V6S|1|AB|C|2730
4V6S|1|AB|G|2731

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AM

50S ribosomal protein L14