IL_4V6S_214

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

4V6S|1|AB|G|1248

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6S_214 not in the Motif Atlas

Homologous match to IL_9DFE_044

Geometric discrepancy: 0.2215

The information below is about IL_9DFE_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

4V6S|1|AB|C|1196
4V6S|1|AB|G|1197
4V6S|1|AB|U|1198
*
4V6S|1|AB|A|1247
4V6S|1|AB|G|1248
4V6S|1|AB|U|1249
4V6S|1|AB|G|1250

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AN

50S ribosomal protein L15

Chain AS

50S ribosomal protein L20