IL_4V6T_014

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

4V6T|1|AA|U|244, 4V6T|1|AA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6T_014 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.1142

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4V6T|1|AA|G|242
4V6T|1|AA|A|243
4V6T|1|AA|U|244
4V6T|1|AA|U|245
4V6T|1|AA|A|246
4V6T|1|AA|G|247
*
4V6T|1|AA|C|277
4V6T|1|AA|G|278
4V6T|1|AA|A|279
4V6T|1|AA|C|280
4V6T|1|AA|G|281
4V6T|1|AA|A|282
4V6T|1|AA|U|283
4V6T|1|AA|C|284

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AQ

30S ribosomal protein S17