3D structure

PDB id
4V6T (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading
Experimental method
ELECTRON MICROSCOPY
Resolution
8.3 Å

Loop

Sequence
ACAAU*AU
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6T_018 not in the Motif Atlas
Homologous match to IL_5J7L_018
Geometric discrepancy: 0.1266
The information below is about IL_5J7L_018
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_03109.3
Basepair signature
cWW-cWS-tWH-cWW-L
Number of instances in this motif group
6

Unit IDs

4V6T|1|AA|A|371
4V6T|1|AA|C|372
4V6T|1|AA|A|373
4V6T|1|AA|A|374
4V6T|1|AA|U|375
*
4V6T|1|AA|A|389
4V6T|1|AA|U|390

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AP
30S ribosomal protein S16

Coloring options:


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