3D structure

PDB id
4V6T (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading
Experimental method
ELECTRON MICROSCOPY
Resolution
8.3 Å

Loop

Sequence
CAG*CAGAAG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6T_021 not in the Motif Atlas
Homologous match to IL_5J7L_021
Geometric discrepancy: 0.1353
The information below is about IL_5J7L_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_33323.1
Basepair signature
cWW-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

4V6T|1|AA|C|440
4V6T|1|AA|A|441
4V6T|1|AA|G|442
*
4V6T|1|AA|C|492
4V6T|1|AA|A|493
4V6T|1|AA|G|494
4V6T|1|AA|A|495
4V6T|1|AA|A|496
4V6T|1|AA|G|497

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AD
30S ribosomal protein S4
Chain AY
elongation factor G

Coloring options:


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