IL_4V6T_029

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

AGU*AUACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6T_029 not in the Motif Atlas

Geometric match to IL_4WF9_012

Geometric discrepancy: 0.3564

The information below is about IL_4WF9_012

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_49061.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

6

Unit IDs

4V6T|1|AA|A|596
4V6T|1|AA|G|597
4V6T|1|AA|U|598
*
4V6T|1|AA|A|640
4V6T|1|AA|U|641
4V6T|1|AA|A|642
4V6T|1|AA|C|643
4V6T|1|AA|U|644

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AH

30S ribosomal protein S8

Chain AQ

30S ribosomal protein S17