IL_4V6T_037
3D structure
- PDB id
- 4V6T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.3 Å
Loop
- Sequence
- GGAGUACG*UAAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6T_037 not in the Motif Atlas
- Homologous match to IL_5J7L_038
- Geometric discrepancy: 0.0834
- The information below is about IL_5J7L_038
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.4
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
4V6T|1|AA|G|887
4V6T|1|AA|G|888
4V6T|1|AA|A|889
4V6T|1|AA|G|890
4V6T|1|AA|U|891
4V6T|1|AA|A|892
4V6T|1|AA|C|893
4V6T|1|AA|G|894
*
4V6T|1|AA|U|905
4V6T|1|AA|A|906
4V6T|1|AA|A|907
4V6T|1|AA|A|908
4V6T|1|AA|A|909
4V6T|1|AA|C|910
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AL
- 30S ribosomal protein S12
Coloring options: