IL_4V6T_055

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6T_055 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1183

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V6T|1|AA|G|1401
4V6T|1|AA|C|1402
4V6T|1|AA|C|1403
4V6T|1|AA|C|1404
*
4V6T|1|AA|G|1497
4V6T|1|AA|U|1498
4V6T|1|AA|A|1499
4V6T|1|AA|A|1500
4V6T|1|AA|C|1501

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AW

SsrA-binding protein

Chain BA

Large subunit ribosomal RNA; LSU rRNA