IL_4V6T_066

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

UUAG*CUUAG

Length

9 nucleotides

Bulged bases

4V6T|1|AV|U|131

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6T_066 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.2684

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V6T|1|AV|U|111
4V6T|1|AV|U|112
4V6T|1|AV|A|113
4V6T|1|AV|G|114
*
4V6T|1|AV|C|130
4V6T|1|AV|U|131
4V6T|1|AV|U|132
4V6T|1|AV|A|133
4V6T|1|AV|G|134

Current chains

Chain AV

full length transfer messenger RNA (tmRNA)

Nearby chains

Chain AC

30S ribosomal protein S3