IL_4V6T_086

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V6T|1|BA|G|801, 4V6T|1|BA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6T_086 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.0659

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V6T|1|BA|G|674
4V6T|1|BA|A|675
4V6T|1|BA|A|676
4V6T|1|BA|A|677
4V6T|1|BA|C|678
*
4V6T|1|BA|G|799
4V6T|1|BA|A|800
4V6T|1|BA|G|801
4V6T|1|BA|A|802
4V6T|1|BA|U|803
4V6T|1|BA|A|804
4V6T|1|BA|G|805
4V6T|1|BA|C|806

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15