3D structure

PDB id
4V6T (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading
Experimental method
ELECTRON MICROSCOPY
Resolution
8.3 Å

Loop

Sequence
GGGGUAG*CGAAUAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6T_096 not in the Motif Atlas
Homologous match to IL_5J7L_270
Geometric discrepancy: 0.056
The information below is about IL_5J7L_270
Detailed Annotation
7x7 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_29198.2
Basepair signature
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
Number of instances in this motif group
4

Unit IDs

4V6T|1|BA|G|856
4V6T|1|BA|G|857
4V6T|1|BA|G|858
4V6T|1|BA|G|859
4V6T|1|BA|U|860
4V6T|1|BA|A|861
4V6T|1|BA|G|862
*
4V6T|1|BA|C|915
4V6T|1|BA|G|916
4V6T|1|BA|A|917
4V6T|1|BA|A|918
4V6T|1|BA|U|919
4V6T|1|BA|A|920
4V6T|1|BA|C|921

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain BB
5S ribosomal RNA; 5S rRNA
Chain BM
50S ribosomal protein L16
Chain BW
50S ribosomal protein L27
Chain BZ
50S ribosomal protein L30

Coloring options:


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