IL_4V6T_096

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

GGGGUAG*CGAAUAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6T_096 not in the Motif Atlas

Homologous match to IL_5J7L_270

Geometric discrepancy: 0.056

The information below is about IL_5J7L_270

Detailed Annotation

7x7 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_29198.2

Basepair signature

cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V6T|1|BA|G|856
4V6T|1|BA|G|857
4V6T|1|BA|G|858
4V6T|1|BA|G|859
4V6T|1|BA|U|860
4V6T|1|BA|A|861
4V6T|1|BA|G|862
*
4V6T|1|BA|C|915
4V6T|1|BA|G|916
4V6T|1|BA|A|917
4V6T|1|BA|A|918
4V6T|1|BA|U|919
4V6T|1|BA|A|920
4V6T|1|BA|C|921

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BM

50S ribosomal protein L16

Chain BW

50S ribosomal protein L27

Chain BZ

50S ribosomal protein L30