IL_4V6T_125

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

4V6T|1|BA|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6T_125 not in the Motif Atlas

Homologous match to IL_5J7L_299

Geometric discrepancy: 0.085

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V6T|1|BA|U|1468
4V6T|1|BA|A|1469
4V6T|1|BA|A|1470
4V6T|1|BA|G|1471
*
4V6T|1|BA|U|1520
4V6T|1|BA|G|1521
4V6T|1|BA|A|1522
4V6T|1|BA|U|1523
4V6T|1|BA|G|1524

Current chains

Chain BA

23S ribosomal RNA

Nearby chains