IL_4V6T_136

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

UGAGG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6T_136 not in the Motif Atlas

Homologous match to IL_5J7L_310

Geometric discrepancy: 0.1402

The information below is about IL_5J7L_310

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

4V6T|1|BA|U|1720
4V6T|1|BA|G|1721
4V6T|1|BA|A|1722
4V6T|1|BA|G|1723
4V6T|1|BA|G|1724
*
4V6T|1|BA|U|1736
4V6T|1|BA|G|1737
4V6T|1|BA|G|1738
4V6T|1|BA|A|1739
4V6T|1|BA|G|1740

Current chains

Chain BA

23S ribosomal RNA

Nearby chains