3D structure

PDB id
4V6T (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading
Experimental method
ELECTRON MICROSCOPY
Resolution
8.3 Å

Loop

Sequence
CCUU*AAUG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6T_152 not in the Motif Atlas
Homologous match to IL_5J7L_327
Geometric discrepancy: 0.3744
The information below is about IL_5J7L_327
Detailed Annotation
Other IL
Broad Annotation
Other IL
Motif group
IL_43644.1
Basepair signature
cWW-cWW-L-R-cWW
Number of instances in this motif group
2

Unit IDs

4V6T|1|BA|C|2103
4V6T|1|BA|C|2104
4V6T|1|BA|U|2105
4V6T|1|BA|U|2106
*
4V6T|1|BA|A|2183
4V6T|1|BA|A|2184
4V6T|1|BA|U|2185
4V6T|1|BA|G|2186

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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