IL_4V6T_155

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

GGAGG*CCGACCUUGAAAUAC

Length

20 nucleotides

Bulged bases

4V6T|1|BA|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6T_155 not in the Motif Atlas

Homologous match to IL_5J7L_329

Geometric discrepancy: 0.3315

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

4V6T|1|BA|G|2124
4V6T|1|BA|G|2125
4V6T|1|BA|A|2126
4V6T|1|BA|G|2127
4V6T|1|BA|G|2128
*
4V6T|1|BA|C|2160
4V6T|1|BA|C|2161
4V6T|1|BA|G|2162
4V6T|1|BA|A|2163
4V6T|1|BA|C|2164
4V6T|1|BA|C|2165
4V6T|1|BA|U|2166
4V6T|1|BA|U|2167
4V6T|1|BA|G|2168
4V6T|1|BA|A|2169
4V6T|1|BA|A|2170
4V6T|1|BA|A|2171
4V6T|1|BA|U|2172
4V6T|1|BA|A|2173
4V6T|1|BA|C|2174

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AX

Transfer RNA; tRNA