IL_4V6T_171

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6T_171 not in the Motif Atlas

Homologous match to IL_5J7L_346

Geometric discrepancy: 0.0775

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V6T|1|BA|C|2652
4V6T|1|BA|U|2653
4V6T|1|BA|A|2654
4V6T|1|BA|G|2655
4V6T|1|BA|U|2656
4V6T|1|BA|A|2657
4V6T|1|BA|C|2658
*
4V6T|1|BA|G|2663
4V6T|1|BA|G|2664
4V6T|1|BA|A|2665
4V6T|1|BA|C|2666
4V6T|1|BA|C|2667
4V6T|1|BA|G|2668

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AY

elongation factor G

Chain BG

50S ribosomal protein L6