IL_4V6T_202

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6T_202 not in the Motif Atlas

Geometric match to IL_8C3A_472

Geometric discrepancy: 0.2127

The information below is about IL_8C3A_472

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

4V6T|1|BA|C|2103
4V6T|1|BA|C|2104
4V6T|1|BA|U|2105
*
4V6T|1|BA|A|2184
4V6T|1|BA|U|2185
4V6T|1|BA|G|2186

Current chains

Chain BA

23S ribosomal RNA

Nearby chains