3D structure

PDB id
4V6T (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading
Experimental method
ELECTRON MICROSCOPY
Resolution
8.3 Å

Loop

Sequence
GGAUAAC*GCUAAUAC
Length
15 nucleotides
Bulged bases
4V6T|1|AA|U|173
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6T_206 not in the Motif Atlas
Homologous match to IL_5J7L_012
Geometric discrepancy: 0.0921
The information below is about IL_5J7L_012
Detailed Annotation
tWH-tWH-tHW-tHW
Broad Annotation
No text annotation
Motif group
IL_80604.6
Basepair signature
cWW-cWW-tWH-tWH-tHW-tHW-cWW
Number of instances in this motif group
3

Unit IDs

4V6T|1|AA|G|147
4V6T|1|AA|G|148
4V6T|1|AA|A|149
4V6T|1|AA|U|150
4V6T|1|AA|A|151
4V6T|1|AA|A|152
4V6T|1|AA|C|153
*
4V6T|1|AA|G|168
4V6T|1|AA|C|169
4V6T|1|AA|U|170
4V6T|1|AA|A|171
4V6T|1|AA|A|172
4V6T|1|AA|U|173
4V6T|1|AA|A|174
4V6T|1|AA|C|175

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AT
30S ribosomal protein S20

Coloring options:


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