IL_4V6T_209
3D structure
- PDB id
- 4V6T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.3 Å
Loop
- Sequence
- AGAAU*GGAAU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6T_209 not in the Motif Atlas
- Geometric match to IL_5J7L_361
- Geometric discrepancy: 0.0879
- The information below is about IL_5J7L_361
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
4V6T|1|AA|A|673
4V6T|1|AA|G|674
4V6T|1|AA|A|675
4V6T|1|AA|A|676
4V6T|1|AA|U|677
*
4V6T|1|AA|G|713
4V6T|1|AA|G|714
4V6T|1|AA|A|715
4V6T|1|AA|A|716
4V6T|1|AA|U|717
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AF
- 30S ribosomal protein S6
- Chain AK
- 30S ribosomal protein S11
- Chain AR
- 30S ribosomal protein S18
- Chain AU
- 30S ribosomal protein S21
- Chain BC
- 50S ribosomal protein L2
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