IL_4V6T_223

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

GUGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

4V6T|1|BA|G|2116, 4V6T|1|BA|A|2117, 4V6T|1|BA|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6T_223 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.545

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

4V6T|1|BA|G|2110
4V6T|1|BA|U|2111
4V6T|1|BA|G|2112
4V6T|1|BA|U|2113
4V6T|1|BA|A|2114
4V6T|1|BA|G|2115
4V6T|1|BA|G|2116
4V6T|1|BA|A|2117
4V6T|1|BA|U|2118
4V6T|1|BA|A|2119
4V6T|1|BA|G|2120
*
4V6T|1|BA|C|2178
4V6T|1|BA|C|2179

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AX

Transfer RNA; tRNA