3D structure

PDB id
4V6V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tetracycline resistance protein Tet(O) bound to the ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
9.8 Å

Loop

Sequence
G(PSU)GCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
4V6V|1|AA|A|532, 4V6V|1|AA|U|534, 4V6V|1|AA|A|535
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6V_027 not in the Motif Atlas
Homologous match to IL_4LFB_021
Geometric discrepancy: 0.2247
The information below is about IL_4LFB_021
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.4
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
4

Unit IDs

4V6V|1|AA|G|515
4V6V|1|AA|PSU|516
4V6V|1|AA|G|517
4V6V|1|AA|C|518
4V6V|1|AA|C|519
4V6V|1|AA|A|520
4V6V|1|AA|G|521
*
4V6V|1|AA|C|528
4V6V|1|AA|G|529
4V6V|1|AA|G|530
4V6V|1|AA|U|531
4V6V|1|AA|A|532
4V6V|1|AA|A|533
4V6V|1|AA|U|534
4V6V|1|AA|A|535
4V6V|1|AA|C|536

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain A1
Tetracycline resistance protein TetO
Chain A2
mRNA
Chain AC
30S ribosomal protein S3
Chain AD
30S ribosomal protein S4
Chain AL
30S ribosomal protein S12

Coloring options:


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